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PGSC0003DMT400002573 PGSC0003DMT400002573 PGSC0003DMT400053293 PGSC0003DMT400053293 PGSC0003DMT400083108 PGSC0003DMT400083108 PGSC0003DMT400012666 PGSC0003DMT400012666 PGSC0003DMT400061040 PGSC0003DMT400061040 PGSC0003DMT400074279 PGSC0003DMT400074279 PGSC0003DMT400065405 PGSC0003DMT400065405
"PGSC0003DMT400012666" - UPA17 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400012666UPA17 (597 aa)    
Predicted Functional Partners:
PGSC0003DMT400065405
GRF1-interacting factor 1 (214 aa)
     
 
  0.473
PGSC0003DMT400002573
Synovial sarcoma associated ss18 protein (223 aa)
     
 
  0.473
PGSC0003DMT400083108
Pollen specific LIM domain-containing protein (179 aa)
           
  0.408
PGSC0003DMT400061040
Basic blue copper protein (120 aa)
           
  0.408
PGSC0003DMT400053293
Conserved gene of unknown function (334 aa)
           
  0.408
PGSC0003DMT400074279
Prolyl endopeptidase (731 aa)
           
  0.406
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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