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PGSC0003DMT400087294 PGSC0003DMT400087294 PGSC0003DMT400024387 PGSC0003DMT400024387 PGSC0003DMT400088088 PGSC0003DMT400088088 PGSC0003DMT400094317 PGSC0003DMT400094317 PGSC0003DMT400085202 PGSC0003DMT400085202 RAD23-like RAD23-like PGSC0003DMT400012996 PGSC0003DMT400012996 PGSC0003DMT400032941 PGSC0003DMT400032941 PGSC0003DMT400036871 PGSC0003DMT400036871 PGSC0003DMT400005365 PGSC0003DMT400005365 PGSC0003DMT400040474 PGSC0003DMT400040474
"PGSC0003DMT400012996" - Ccd1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400012996Ccd1 (115 aa)    
Predicted Functional Partners:
PGSC0003DMT400040474
DNA repair protein xp-C / rad4 (928 aa)
       
  0.967
PGSC0003DMT400024387
Kinesin heavy chain (1265 aa)
       
  0.946
PGSC0003DMT400005365
Leng8 protein (417 aa)
     
 
  0.941
RAD23-like
RAD23 (386 aa)
     
  0.790
PGSC0003DMT400036871
Uv excision repair protein rad23 (367 aa)
     
  0.790
PGSC0003DMT400032941
RAD23 protein (390 aa)
     
  0.790
PGSC0003DMT400094317
Actin-11 (148 aa)
     
  0.752
PGSC0003DMT400088088
Actin (194 aa)
     
  0.752
PGSC0003DMT400087294
Actin, cytoplasmic 2-like isoform 2 (274 aa)
     
  0.752
PGSC0003DMT400085202
Actin 1 (149 aa)
     
  0.752
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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