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PGSC0003DMT400065617 PGSC0003DMT400065617 PGSC0003DMT400036942 PGSC0003DMT400036942 PGSC0003DMT400013082 PGSC0003DMT400013082 PGSC0003DMT400078196 PGSC0003DMT400078196 PGSC0003DMT400042256 PGSC0003DMT400042256 PGSC0003DMT400010023 PGSC0003DMT400010023 PGSC0003DMT400038671 PGSC0003DMT400038671 PGSC0003DMT400005519 PGSC0003DMT400005519 PGSC0003DMT400018853 PGSC0003DMT400018853 PGSC0003DMT400033236 PGSC0003DMT400033236 PGSC0003DMT400025700 PGSC0003DMT400025700
"PGSC0003DMT400013082" - Squalene monooxygenase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400013082Squalene monooxygenase (373 aa)    
Predicted Functional Partners:
PGSC0003DMT400078196
C-4 methyl sterol oxidase (269 aa)
     
 
  0.929
PGSC0003DMT400033236
C-4 sterol methyl oxidase (300 aa)
     
 
  0.929
PGSC0003DMT400010023
C-4 methyl sterol oxidase (213 aa)
     
 
  0.929
PGSC0003DMT400005519
C-4 sterol methyl oxidase 2 (266 aa)
     
 
  0.929
PGSC0003DMT400042256
Obtusifoliol 14alpha-demethylase (487 aa)
     
 
  0.909
PGSC0003DMT400038671
3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 (96 aa)
     
  0.868
PGSC0003DMT400025700
Hydroxysteroid dehydrogenase (478 aa)
     
  0.868
PGSC0003DMT400018853
3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (420 aa)
     
  0.868
PGSC0003DMT400036942
S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase (327 aa)
   
  0.809
PGSC0003DMT400065617
Elongation factor 1-gamma (414 aa)
       
 
  0.800
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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