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PGSC0003DMT400023577 PGSC0003DMT400023577 PGSC0003DMT400066226 PGSC0003DMT400066226 PGSC0003DMT400068740 PGSC0003DMT400068740 PGSC0003DMT400072567 PGSC0003DMT400072567 PGSC0003DMT400053396 PGSC0003DMT400053396 PGSC0003DMT400070673 PGSC0003DMT400070673 PGSC0003DMT400072494 PGSC0003DMT400072494 PGSC0003DMT400053391 PGSC0003DMT400053391 clpP clpP ycf1 ycf1 PGSC0003DMT400063334 PGSC0003DMT400063334
"clpP" - ATP-dependent Clp protease proteolytic subunit in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
clpPATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (105 aa)    
Predicted Functional Partners:
PGSC0003DMT400023577
ATP-dependent clp protease ATP-binding subunit clpx (571 aa)
 
 
  0.940
PGSC0003DMT400053396
ATP-dependent clp protease ATP-binding subunit clpx (339 aa)
 
 
  0.939
PGSC0003DMT400053391
ATP-dependent clp protease ATP-binding subunit clpx (123 aa)
 
 
  0.919
PGSC0003DMT400066226
Tip120 (339 aa)
   
 
  0.898
ycf1
Membrane protein ycf1; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope (226 aa)
           
  0.822
PGSC0003DMT400072494
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors (426 aa)
           
  0.800
PGSC0003DMT400063334
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors (431 aa)
           
  0.800
PGSC0003DMT400072567
Conserved gene of unknown function (742 aa)
   
 
  0.771
PGSC0003DMT400070673
ATP binding protein (1055 aa)
   
 
  0.771
PGSC0003DMT400068740
Conserved gene of unknown function (1078 aa)
   
 
  0.771
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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