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atpB atpB PGSC0003DMT400069186 PGSC0003DMT400069186 PGSC0003DMT400071317 PGSC0003DMT400071317 PGSC0003DMT400080167 PGSC0003DMT400080167 PGSC0003DMT400049296 PGSC0003DMT400049296 PGSC0003DMT400013965 PGSC0003DMT400013965 PGSC0003DMT400079981 PGSC0003DMT400079981 PGSC0003DMT400040138 PGSC0003DMT400040138 PGSC0003DMT400001904 PGSC0003DMT400001904 PGSC0003DMT400006517 PGSC0003DMT400006517 PGSC0003DMT400022823 PGSC0003DMT400022823
"PGSC0003DMT400013965" - Rab GTPase activator in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400013965Rab GTPase activator (551 aa)    
Predicted Functional Partners:
atpB
H+-transporting two-sector ATPase, alpha/beta subunit, central region; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (408 aa)
       
      0.908
PGSC0003DMT400080167
RAB7A (189 aa)
     
 
  0.737
PGSC0003DMT400079981
Nt-rab7c protein (252 aa)
     
 
  0.737
PGSC0003DMT400006517
Small GTPase Rab2 (205 aa)
     
 
  0.737
PGSC0003DMT400001904
GTP-binding protein (206 aa)
     
 
  0.737
PGSC0003DMT400069186
Protein FAM18B; Golgi membrane protein involved in vesicular trafficking (183 aa)
     
      0.610
PGSC0003DMT400071317
GTP-binding protein (216 aa)
       
  0.589
PGSC0003DMT400049296
Small GTP-binding protein (216 aa)
       
  0.589
PGSC0003DMT400040138
Ethylene-responsive small GTP-binding protein (216 aa)
       
  0.589
PGSC0003DMT400022823
Small GTP-binding protein (216 aa)
       
  0.589
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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