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PGSC0003DMT400078262 PGSC0003DMT400078262 PGSC0003DMT400072262 PGSC0003DMT400072262 PGSC0003DMT400081386 PGSC0003DMT400081386 PGSC0003DMT400057595 PGSC0003DMT400057595 PGSC0003DMT400056692 PGSC0003DMT400056692 PGSC0003DMT400073947 PGSC0003DMT400073947 PGSC0003DMT400054904 PGSC0003DMT400054904 PGSC0003DMT400014121 PGSC0003DMT400014121 PGSC0003DMT400091014 PGSC0003DMT400091014 PGSC0003DMT400054796 PGSC0003DMT400054796 PGSC0003DMT400054911 PGSC0003DMT400054911
"PGSC0003DMT400014121" - Hcr2-0A in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400014121Hcr2-0A (611 aa)    
Predicted Functional Partners:
PGSC0003DMT400056692
ATP-dependent RNA helicase (1141 aa)
     
  0.749
PGSC0003DMT400091014
Small glutamine-rich tetratricopeptide repeat-containing protein A (607 aa)
     
  0.699
PGSC0003DMT400054911
Small glutamine-rich tetratricopeptide repeat-containing protein A (521 aa)
     
  0.699
PGSC0003DMT400054904
Small glutamine-rich tetratricopeptide repeat-containing protein A (604 aa)
     
  0.699
PGSC0003DMT400054796
Small glutamine-rich tetratricopeptide repeat-containing protein A (615 aa)
     
  0.699
PGSC0003DMT400081386
U1snRNP-specific protein, U1A (253 aa)
     
  0.693
PGSC0003DMT400078262
Spliceosomal protein (232 aa)
     
  0.693
PGSC0003DMT400073947
PRP8 protein (2389 aa)
       
  0.673
PGSC0003DMT400072262
Small nuclear ribonucleoprotein f; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
       
    0.671
PGSC0003DMT400057595
Conserved gene of unknown function (580 aa)
     
    0.671
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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