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PGSC0003DMT400021010 PGSC0003DMT400021010 PGSC0003DMT400060913 PGSC0003DMT400060913 PGSC0003DMT400057810 PGSC0003DMT400057810 PGSC0003DMT400069978 PGSC0003DMT400069978 PGSC0003DMT400014568 PGSC0003DMT400014568 PGSC0003DMT400071930 PGSC0003DMT400071930 PGSC0003DMT400068600 PGSC0003DMT400068600 RPB1 RPB1 PGSC0003DMT400034735 PGSC0003DMT400034735 PGSC0003DMT400038588 PGSC0003DMT400038588 PGSC0003DMT400021014 PGSC0003DMT400021014
"PGSC0003DMT400014568" - Transcription initiation factor IIE alpha subunit family protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400014568Transcription initiation factor IIE alpha subunit family protein (472 aa)    
Predicted Functional Partners:
PGSC0003DMT400034735
Tfiif-alpha (501 aa)
     
  0.989
PGSC0003DMT400071930
Transcription initiation factor IIF subunit beta (192 aa)
     
  0.985
PGSC0003DMT400068600
Transcription initiation factor IIF subunit beta (276 aa)
     
  0.985
PGSC0003DMT400069978
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
       
  0.985
RPB1
NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1839 aa)
       
  0.984
PGSC0003DMT400057810
Tfiih, polypeptide (175 aa)
     
    0.983
PGSC0003DMT400060913
Transcription initiation factor IIB-2 (312 aa)
     
  0.981
PGSC0003DMT400038588
Transcription factor IIB (425 aa)
     
  0.981
PGSC0003DMT400021014
Transcription initiation factor IIB-2 (311 aa)
     
  0.981
PGSC0003DMT400021010
Transcription initiation factor IIB-2 (313 aa)
     
  0.981
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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