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PHYB PHYB PGSC0003DMT400057975 PGSC0003DMT400057975 CS-A CS-A CPK4 CPK4 PGSC0003DMT400014686 PGSC0003DMT400014686 RCA RCA HMG2 HMG2 Lhcb1-2 Lhcb1-2 PRP1 PRP1 PGSC0003DMT400027932 PGSC0003DMT400027932 PMEI PMEI
"PGSC0003DMT400014686" - Lipid transfer protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
PGSC0003DMT400014686Lipid transfer protein (93 aa)    
Predicted Functional Partners:
PGSC0003DMT400057975
Cytidine deaminase (186 aa)
           
  0.482
HMG2
3-hydroxy-3-methylglutaryl coenzyme A reductase; Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants (596 aa)
           
  0.457
RCA
Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (437 aa)
           
  0.457
CS-A
Cytosolic cysteine synthase (325 aa)
           
  0.408
CPK4
Calcium-dependent protein kinase 4; Regulates the production of reactive oxygen species (ROS) by NADPH oxidase (567 aa)
           
  0.408
PGSC0003DMT400027932
ERF transcription factor (247 aa)
           
  0.408
PRP1
Glutathion S-transferase (217 aa)
           
  0.408
PHYB
Phytochrome B; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose- bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reducta [...] (1130 aa)
           
  0.407
PMEI
21kD protein (196 aa)
           
  0.407
Lhcb1-2
Chlorophyll a/b binding protein (265 aa)
     
   
  0.406
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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