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PGSC0003DMT400027553 PGSC0003DMT400027553 PGSC0003DMT400060892 PGSC0003DMT400060892 PGSC0003DMT400054941 PGSC0003DMT400054941 PGSC0003DMT400071114 PGSC0003DMT400071114 PGSC0003DMT400042226 PGSC0003DMT400042226 PGSC0003DMT400078300 PGSC0003DMT400078300 PGSC0003DMT400048813 PGSC0003DMT400048813 PGSC0003DMT400014917 PGSC0003DMT400014917 PGSC0003DMT400025837 PGSC0003DMT400025837 PGSC0003DMT400027555 PGSC0003DMT400027555 PGSC0003DMT400030156 PGSC0003DMT400030156
"PGSC0003DMT400014917" - RNA-binding protein nob1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400014917RNA-binding protein nob1 (642 aa)    
Predicted Functional Partners:
PGSC0003DMT400025837
Ribosome biogenesis protein tsr1 (790 aa)
     
  0.997
PGSC0003DMT400071114
Bystin (448 aa)
     
  0.995
PGSC0003DMT400078300
Nucleic acid binding protein (212 aa)
     
  0.994
PGSC0003DMT400054941
Serine/threonine-protein kinase rio2 (459 aa)
     
  0.987
PGSC0003DMT400048813
Ribosome biogenesis regulatory protein (329 aa)
     
        0.976
PGSC0003DMT400060892
Nucleotide binding protein (555 aa)
     
 
  0.924
PGSC0003DMT400030156
Nucleotide binding protein (821 aa)
     
  0.917
PGSC0003DMT400027555
Transducin family protein (809 aa)
     
  0.917
PGSC0003DMT400027553
Conserved gene of unknown function (360 aa)
     
  0.917
PGSC0003DMT400042226
U3 small nucleolar ribonucleoprotein protein imp4 (324 aa)
     
 
  0.914
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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