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PGSC0003DMT400069978 PGSC0003DMT400069978 PGSC0003DMT400013034 PGSC0003DMT400013034 PGSC0003DMT400051453 PGSC0003DMT400051453 PGSC0003DMT400051953 PGSC0003DMT400051953 PGSC0003DMT400054839 PGSC0003DMT400054839 RPB1 RPB1 PGSC0003DMT400004488 PGSC0003DMT400004488 PGSC0003DMT400077392 PGSC0003DMT400077392 PGSC0003DMT400023048 PGSC0003DMT400023048 PGSC0003DMT400020911 PGSC0003DMT400020911 PGSC0003DMT400015108 PGSC0003DMT400015108
"PGSC0003DMT400015108" - DNA-directed RNA polymerase II in Solanum tuberosum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PGSC0003DMT400015108DNA-directed RNA polymerase II (138 aa)    
Predicted Functional Partners:
PGSC0003DMT400069978
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
  0.988
PGSC0003DMT400013034
RNA polymerase (145 aa)
     
  0.988
PGSC0003DMT400023048
DNA-directed RNA polymerase IIa (144 aa)
     
  0.987
PGSC0003DMT400004488
RNA polymerase (144 aa)
     
  0.987
PGSC0003DMT400054839
DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide (59 aa)
     
  0.987
PGSC0003DMT400051953
DNA-directed RNA polymerases I, II, and III subunit RPABC5 (73 aa)
     
  0.987
PGSC0003DMT400020911
DNA-directed RNA polymerase II 13.6 kD polypeptide (116 aa)
     
  0.987
RPB1
NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1839 aa)
       
  0.987
PGSC0003DMT400077392
DNA-directed RNA polymerase II (206 aa)
     
  0.979
PGSC0003DMT400051453
DNA-directed RNA polymerase II (206 aa)
     
  0.979
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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