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PGSC0003DMT400042871 PGSC0003DMT400042871 PGSC0003DMT400000310 PGSC0003DMT400000310 PGSC0003DMT400015327 PGSC0003DMT400015327 PGSC0003DMT400073848 PGSC0003DMT400073848 PGSC0003DMT400076029 PGSC0003DMT400076029
"PGSC0003DMT400015327" - Conserved gene of unknown function in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400015327Conserved gene of unknown function (257 aa)    
Predicted Functional Partners:
PGSC0003DMT400073848
SAP1 protein (330 aa)
           
  0.515
PGSC0003DMT400000310
Ubiquitin family protein (483 aa)
           
  0.515
PGSC0003DMT400076029
TRNA synthetase class I family protein (339 aa)
           
  0.477
PGSC0003DMT400042871
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (547 aa)
           
  0.400
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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