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PGSC0003DMT400004146 PGSC0003DMT400004146 PGSC0003DMT400025551 PGSC0003DMT400025551 PGSC0003DMT400064159 PGSC0003DMT400064159 PGSC0003DMT400079491 PGSC0003DMT400079491 PGSC0003DMT400045761 PGSC0003DMT400045761 PGSC0003DMT400033116 PGSC0003DMT400033116 PGSC0003DMT400023621 PGSC0003DMT400023621 PGSC0003DMT400003012 PGSC0003DMT400003012 PGSC0003DMT400014938 PGSC0003DMT400014938 PGSC0003DMT400015455 PGSC0003DMT400015455 PGSC0003DMT400003681 PGSC0003DMT400003681
"PGSC0003DMT400015455" - Protein cdcH in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400015455Protein cdcH (763 aa)    
Predicted Functional Partners:
PGSC0003DMT400079491
RNA-binding protein (197 aa)
     
 
  0.968
PGSC0003DMT400025551
Dead box ATP-dependent RNA helicase (745 aa)
     
 
  0.967
PGSC0003DMT400064159
Ribosome biogenesis protein bop1; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (752 aa)
     
 
  0.967
PGSC0003DMT400003012
Conserved gene of unknown function (620 aa)
     
      0.951
PGSC0003DMT400045761
Peroxidase 31 (747 aa)
     
 
  0.951
PGSC0003DMT400014938
WD-repeat protein (416 aa)
     
 
  0.943
PGSC0003DMT400023621
Slow walker 2 (621 aa)
     
 
  0.926
PGSC0003DMT400033116
Ribosome biogenesis protein brix (312 aa)
     
      0.922
PGSC0003DMT400004146
Transducin family protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (437 aa)
     
 
  0.920
PGSC0003DMT400003681
Transducin family protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (440 aa)
     
 
  0.920
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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