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PGSC0003DMT400084207 PGSC0003DMT400084207 PGSC0003DMT400058107 PGSC0003DMT400058107 PGSC0003DMT400053006 PGSC0003DMT400053006 PGSC0003DMT400078295 PGSC0003DMT400078295 PGSC0003DMT400082793 PGSC0003DMT400082793 PGSC0003DMT400076403 PGSC0003DMT400076403 PGSC0003DMT400015657 PGSC0003DMT400015657 PGSC0003DMT400056814 PGSC0003DMT400056814 PGSC0003DMT400049914 PGSC0003DMT400049914 PGSC0003DMT400054795 PGSC0003DMT400054795 PGSC0003DMT400057302 PGSC0003DMT400057302
"PGSC0003DMT400015657" - Ring finger protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400015657Ring finger protein (395 aa)    
Predicted Functional Partners:
PGSC0003DMT400082793
E3 ubiquitin-protein ligase RING1a (511 aa)
       
  0.973
PGSC0003DMT400076403
Zinc finger protein (368 aa)
       
  0.973
PGSC0003DMT400084207
Ubiquitin carrier protein (148 aa)
       
    0.724
PGSC0003DMT400078295
Ubiquitin-conjugating enzyme E2-17 kDa (148 aa)
       
    0.724
PGSC0003DMT400058107
Ubiquitin carrier protein (148 aa)
       
    0.724
PGSC0003DMT400057302
Ubiquitin carrier protein (148 aa)
       
    0.724
PGSC0003DMT400056814
Ubiquitin carrier protein (581 aa)
       
    0.724
PGSC0003DMT400054795
Ubiquitin-conjugating enzyme E2 36 (153 aa)
       
    0.724
PGSC0003DMT400053006
Ubiquitin carrier protein (175 aa)
       
    0.724
PGSC0003DMT400049914
Ubiquitin carrier protein (148 aa)
       
    0.724
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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