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PGSC0003DMT400033135 PGSC0003DMT400033135 PGSC0003DMT400061871 PGSC0003DMT400061871 PGSC0003DMT400067326 PGSC0003DMT400067326 PGSC0003DMT400040293 PGSC0003DMT400040293 PGSC0003DMT400033137 PGSC0003DMT400033137 PGSC0003DMT400036518 PGSC0003DMT400036518 PGSC0003DMT400015997 PGSC0003DMT400015997 PGSC0003DMT400042568 PGSC0003DMT400042568 PGSC0003DMT400058247 PGSC0003DMT400058247 PGSC0003DMT400033230 PGSC0003DMT400033230 PGSC0003DMT400019067 PGSC0003DMT400019067
"PGSC0003DMT400015997" - Basic helix-loop-helix family protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400015997Basic helix-loop-helix family protein (732 aa)    
Predicted Functional Partners:
PGSC0003DMT400042568
DNA-repair protein xrcc1 (384 aa)
     
  0.976
PGSC0003DMT400033137
Apurinic endonuclease-redox protein (301 aa)
     
 
  0.951
PGSC0003DMT400033135
Apurinic endonuclease-redox protein (122 aa)
     
 
  0.951
PGSC0003DMT400036518
Ku70 homolog (286 aa)
     
  0.851
PGSC0003DMT400061871
Tyrosyl-DNA phosphodiesterase (511 aa)
     
 
  0.776
PGSC0003DMT400033230
Ku P80 DNA helicase; Single-stranded DNA-dependent ATP-dependent helicase (710 aa)
     
  0.762
PGSC0003DMT400040293
DNA pol lambda (184 aa)
     
  0.759
PGSC0003DMT400019067
DNA cross-link repair protein pso2/snm1 (484 aa)
     
 
  0.684
PGSC0003DMT400067326
DNA cross-link repair protein pso2/snm1 (437 aa)
     
 
  0.679
PGSC0003DMT400058247
Conserved gene of unknown function (86 aa)
     
 
  0.679
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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