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PGSC0003DMT400037401 PGSC0003DMT400037401 PGSC0003DMT400089149 PGSC0003DMT400089149 PGSC0003DMT400059650 PGSC0003DMT400059650 PGSC0003DMT400016144 PGSC0003DMT400016144 PGSC0003DMT400072932 PGSC0003DMT400072932 PGSC0003DMT400011736 PGSC0003DMT400011736 PGSC0003DMT400056100 PGSC0003DMT400056100 PGSC0003DMT400042449 PGSC0003DMT400042449 PGSC0003DMT400037410 PGSC0003DMT400037410 PGSC0003DMT400057274 PGSC0003DMT400057274 PGSC0003DMT400037403 PGSC0003DMT400037403
"PGSC0003DMT400016144" - Conserved gene of unknown function in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400016144Conserved gene of unknown function (423 aa)    
Predicted Functional Partners:
PGSC0003DMT400011736
Ubiquitin extension protein (181 aa)
       
    0.572
PGSC0003DMT400042449
Derlin-2; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (245 aa)
     
  0.557
PGSC0003DMT400072932
SPFH domain-containing protein 2 (358 aa)
       
  0.528
PGSC0003DMT400089149
Polyubiquitin (457 aa)
       
    0.517
PGSC0003DMT400059650
Ubiquitin (205 aa)
       
    0.517
PGSC0003DMT400057274
Polyubiquitin (190 aa)
       
    0.517
PGSC0003DMT400056100
Ubiquitin (207 aa)
       
    0.517
PGSC0003DMT400037410
Polyubiquitin 1 (55 aa)
       
    0.517
PGSC0003DMT400037403
Polyubiquitin (533 aa)
       
    0.517
PGSC0003DMT400037401
Polyubiquitin (383 aa)
       
    0.517
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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