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PGSC0003DMT400007431 PGSC0003DMT400007431 PGSC0003DMT400003731 PGSC0003DMT400003731 PGSC0003DMT400059349 PGSC0003DMT400059349 PGSC0003DMT400016212 PGSC0003DMT400016212 PGSC0003DMT400025104 PGSC0003DMT400025104 rps4 rps4
"PGSC0003DMT400016212" - N-acetyltransferase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400016212N-acetyltransferase (170 aa)    
Predicted Functional Partners:
rps4
30S ribosomal protein S4, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (180 aa)
     
 
  0.621
PGSC0003DMT400059349
40S ribosomal protein S9 (197 aa)
     
 
  0.621
PGSC0003DMT400007431
40S ribosomal protein S9 (197 aa)
     
 
  0.621
PGSC0003DMT400003731
U3 small nucleolar ribonucleoprotein protein IMP3 (182 aa)
     
 
  0.621
PGSC0003DMT400025104
Ferredoxin-dependent glutamate synthase 1 (1621 aa)
           
  0.508
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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