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PGSC0003DMT400053220 PGSC0003DMT400053220 PGSC0003DMT400013679 PGSC0003DMT400013679 PGSC0003DMT400016535 PGSC0003DMT400016535 PGSC0003DMT400066376 PGSC0003DMT400066376
"PGSC0003DMT400016535" - 3-phosphoinositide-dependent protein kinase-1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT4000165353-phosphoinositide-dependent protein kinase-1 (316 aa)    
Predicted Functional Partners:
PGSC0003DMT400013679
Peroxisome assembly factor-2 (930 aa)
       
 
  0.819
PGSC0003DMT400053220
Peroxisome biogenesis factor 13 (330 aa)
       
 
  0.579
PGSC0003DMT400066376
Nucleic acid binding protein (262 aa)
           
  0.410
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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