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PGSC0003DMT400020987 PGSC0003DMT400020987 PGSC0003DMT400080258 PGSC0003DMT400080258 PGSC0003DMT400056692 PGSC0003DMT400056692 PGSC0003DMT400053368 PGSC0003DMT400053368 PGSC0003DMT400011821 PGSC0003DMT400011821 PGSC0003DMT400016680 PGSC0003DMT400016680 PGSC0003DMT400052548 PGSC0003DMT400052548 PGSC0003DMT400057785 PGSC0003DMT400057785 PHP PHP PGSC0003DMT400063938 PGSC0003DMT400063938 PGSC0003DMT400047222 PGSC0003DMT400047222
"PGSC0003DMT400016680" - F-box and wd40 domain protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400016680F-box and wd40 domain protein (446 aa)    
Predicted Functional Partners:
PHP
PAF1 complex component (393 aa)
     
  0.965
PGSC0003DMT400056692
ATP-dependent RNA helicase (1141 aa)
       
 
  0.812
PGSC0003DMT400063938
Suppressor of ty (847 aa)
       
    0.749
PGSC0003DMT400047222
DNA-directed RNA polymerase (875 aa)
       
    0.749
PGSC0003DMT400080258
Binding protein (170 aa)
       
 
  0.740
PGSC0003DMT400020987
Protein kinase (167 aa)
       
 
  0.740
PGSC0003DMT400011821
Binding protein (167 aa)
       
 
  0.740
PGSC0003DMT400057785
RNA polymerase-associated protein RTF1 (652 aa)
     
  0.693
PGSC0003DMT400053368
Helicase (992 aa)
       
  0.672
PGSC0003DMT400052548
HUA enhancer 2 (979 aa)
       
  0.672
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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