Full Link:
STRINGSTRING
PGSC0003DMT400048880 PGSC0003DMT400048880 PGSC0003DMT400058231 PGSC0003DMT400058231 PGSC0003DMT400014822 PGSC0003DMT400014822 PGSC0003DMT400050379 PGSC0003DMT400050379 PGSC0003DMT400016981 PGSC0003DMT400016981 THF1 THF1 PGSC0003DMT400069485 PGSC0003DMT400069485 PGSC0003DMT400054480 PGSC0003DMT400054480 MSP MSP PGSC0003DMT400001421 PGSC0003DMT400001421 PSBO PSBO
"PGSC0003DMT400016981" - Conserved gene of unknown function in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400016981Conserved gene of unknown function (364 aa)    
Predicted Functional Partners:
PGSC0003DMT400014822
Conserved gene of unknown function (178 aa)
   
        0.662
PGSC0003DMT400050379
APE1 (285 aa)
   
        0.658
PGSC0003DMT400058231
Conserved gene of unknown function (199 aa)
   
        0.602
PSBO
Oxygen-evolving enhancer protein 1, chloroplastic; Stabilizes the manganese cluster which is the primary site of water splitting (333 aa)
   
        0.589
MSP
Oxygen-evolving enhancer protein 1, chloroplastic (329 aa)
   
        0.589
PGSC0003DMT400048880
Conserved gene of unknown function (333 aa)
   
        0.587
PGSC0003DMT400054480
Photosystem I subunit III (228 aa)
   
   
  0.576
PGSC0003DMT400001421
Peptidyl-prolyl cis-trans isomerase (451 aa)
   
        0.556
THF1
Protein THYLAKOID FORMATION1, chloroplastic; Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development (By similarity) (293 aa)
   
        0.553
PGSC0003DMT400069485
Tetrapyrrole-binding protein, chloroplast (264 aa)
   
        0.551
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (2%)