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PGSC0003DMT400096877 PGSC0003DMT400096877 PGSC0003DMT400091014 PGSC0003DMT400091014 PGSC0003DMT400054911 PGSC0003DMT400054911 PGSC0003DMT400017488 PGSC0003DMT400017488 PGSC0003DMT400079040 PGSC0003DMT400079040 PGSC0003DMT400084773 PGSC0003DMT400084773 PGSC0003DMT400017098 PGSC0003DMT400017098 PGSC0003DMT400050490 PGSC0003DMT400050490 PGSC0003DMT400009505 PGSC0003DMT400009505 PGSC0003DMT400054796 PGSC0003DMT400054796 PGSC0003DMT400054904 PGSC0003DMT400054904
"PGSC0003DMT400017098" - RelA-SpoT RSH1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
PGSC0003DMT400017098RelA-SpoT RSH1 (291 aa)    
Predicted Functional Partners:
PGSC0003DMT400096877
GTP1/OBG family member (604 aa)
     
 
  0.862
PGSC0003DMT400009505
GTP-dependent nucleic acid-binding protein engD (505 aa)
     
 
  0.862
PGSC0003DMT400050490
UMP synthase (472 aa)
         
  0.759
PGSC0003DMT400017488
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1487 aa)
   
 
  0.588
PGSC0003DMT400091014
Small glutamine-rich tetratricopeptide repeat-containing protein A (607 aa)
     
  0.555
PGSC0003DMT400054911
Small glutamine-rich tetratricopeptide repeat-containing protein A (521 aa)
     
  0.555
PGSC0003DMT400054904
Small glutamine-rich tetratricopeptide repeat-containing protein A (604 aa)
     
  0.555
PGSC0003DMT400054796
Small glutamine-rich tetratricopeptide repeat-containing protein A (615 aa)
     
  0.555
PGSC0003DMT400084773
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (109 aa)
       
 
  0.549
PGSC0003DMT400079040
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (136 aa)
       
 
  0.549
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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