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PGSC0003DMT400011003 PGSC0003DMT400011003 PGSC0003DMT400073881 PGSC0003DMT400073881 PGSC0003DMT400073919 PGSC0003DMT400073919 PGSC0003DMT400053933 PGSC0003DMT400053933 PGSC0003DMT400060984 PGSC0003DMT400060984 PGSC0003DMT400009550 PGSC0003DMT400009550 PGSC0003DMT400069686 PGSC0003DMT400069686 PGSC0003DMT400000592 PGSC0003DMT400000592 PGSC0003DMT400019417 PGSC0003DMT400019417 PGSC0003DMT400027933 PGSC0003DMT400027933 PGSC0003DMT400017200 PGSC0003DMT400017200
"PGSC0003DMT400017200" - Helicase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400017200Helicase (106 aa)    
Predicted Functional Partners:
PGSC0003DMT400053933
3’-5’ exonuclease (857 aa)
     
  0.979
PGSC0003DMT400000592
Exosome complex exonuclease RRP41 (243 aa)
     
  0.970
PGSC0003DMT400027933
Conserved gene of unknown function (115 aa)
     
 
  0.913
PGSC0003DMT400011003
Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease (238 aa)
     
  0.902
PGSC0003DMT400073881
3-5 exoribonuclease CSL4 (198 aa)
     
  0.881
PGSC0003DMT400069686
Exosome complex exonuclease RRP40 (235 aa)
     
  0.880
PGSC0003DMT400060984
3’-5’-exoribonuclease/RNA binding protein (329 aa)
     
  0.878
PGSC0003DMT400019417
3’-5’-exoribonuclease/RNA binding (303 aa)
     
  0.878
PGSC0003DMT400009550
5’->3’ exoribonuclease (1099 aa)
     
 
  0.874
PGSC0003DMT400073919
Conserved gene of unknown function (221 aa)
       
  0.869
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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