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PGSC0003DMT400075275 PGSC0003DMT400075275 PGSC0003DMT400005365 PGSC0003DMT400005365 PGSC0003DMT400086994 PGSC0003DMT400086994 PGSC0003DMT400078237 PGSC0003DMT400078237 SUS1 SUS1 PGSC0003DMT400038315 PGSC0003DMT400038315 PGSC0003DMT400072306 PGSC0003DMT400072306 PGSC0003DMT400055078 PGSC0003DMT400055078 PGSC0003DMT400004867 PGSC0003DMT400004867 PGSC0003DMT400040081 PGSC0003DMT400040081 PGSC0003DMT400018502 PGSC0003DMT400018502
"SUS1" - E2 protein isoform 5 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUS1E2 protein isoform 5; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking [...] (128 aa)    
Predicted Functional Partners:
PGSC0003DMT400078237
Conserved gene of unknown function (176 aa)
     
  0.976
PGSC0003DMT400086994
Ubiquitin carboxyl-terminal hydrolase (133 aa)
       
  0.939
PGSC0003DMT400038315
Ubiquitin carboxyl-terminal hydrolase (448 aa)
       
  0.939
PGSC0003DMT400005365
Leng8 protein (417 aa)
       
 
  0.934
PGSC0003DMT400072306
Fasciclin-like arabinogalactan protein 14 (453 aa)
       
      0.671
PGSC0003DMT400055078
Fasciclin-like arabinogalactan protein 14 (436 aa)
       
      0.671
PGSC0003DMT400075275
Transcription factor (138 aa)
     
  0.648
PGSC0003DMT400040081
DNA methyltransferase (206 aa)
       
      0.647
PGSC0003DMT400018502
DNA methyltransferase (609 aa)
       
      0.647
PGSC0003DMT400004867
DNA methyltransferase (607 aa)
       
      0.647
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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