Full Link:
STRINGSTRING
Si009169m Si009169m Si028000m Si028000m Si034500m Si034500m Si035096m Si035096m Si000065m Si000065m Si000422m Si000422m Si031270m Si031270m Si033113m Si033113m Si013115m Si013115m Si013247m Si013247m Si016066m Si016066m
"Si000422m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si000422mUncharacterized protein (748 aa)    
Predicted Functional Partners:
Si035096m
Uncharacterized protein (534 aa)
     
  0.956
Si034500m
Transcription initiation factor IIF alpha subunit (692 aa)
     
  0.956
Si016066m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2050 aa)
     
  0.940
Si009169m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1546 aa)
     
  0.940
Si028000m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1843 aa)
     
  0.937
Si013247m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (860 aa)
     
  0.937
Si013115m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1852 aa)
     
  0.937
Si000065m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1303 aa)
     
  0.937
Si033113m
Uncharacterized protein (230 aa)
       
  0.932
Si031270m
Uncharacterized protein (175 aa)
       
  0.921
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
Server load: low (1%)