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Si009636m Si009636m Si021535m Si021535m Si017226m Si017226m Si000869m Si000869m Si005731m Si005731m Si016066m Si016066m Si021349m Si021349m Si002299m Si002299m Si009169m Si009169m Si006304m Si006304m Si009455m Si009455m
"Si000869m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si000869mUncharacterized protein (560 aa)    
Predicted Functional Partners:
Si021349m
Uncharacterized protein (711 aa)
     
  0.975
Si021535m
Uncharacterized protein (599 aa)
     
  0.926
Si009455m
Uncharacterized protein (745 aa)
     
  0.926
Si016066m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2050 aa)
     
  0.917
Si009169m
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1546 aa)
     
  0.917
Si017226m
Uncharacterized protein (439 aa)
     
  0.912
Si009636m
Uncharacterized protein (606 aa)
     
  0.912
Si006304m
Uncharacterized protein (492 aa)
     
  0.912
Si002299m
Uncharacterized protein (316 aa)
     
  0.912
Si005731m
Transcription elongation factor SPT5 (1124 aa)
     
  0.894
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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