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Si036841m Si036841m Si017625m Si017625m Si006349m Si006349m Si020943m Si020943m Si001690m Si001690m Si036029m Si036029m Si010291m Si010291m Si000006m Si000006m Si006492m Si006492m Si014020m Si014020m Si025283m Si025283m
"Si001690m" - Uroporphyrinogen decarboxylase in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si001690mUroporphyrinogen decarboxylase (405 aa)    
Predicted Functional Partners:
Si014020m
Uncharacterized protein (344 aa)
   
 
  0.983
Si010291m
Uncharacterized protein (392 aa)
   
 
  0.983
Si025283m
Uncharacterized protein (476 aa)
       
  0.949
Si036841m
Uncharacterized protein (296 aa)
     
 
  0.907
Si017625m
Uncharacterized protein (356 aa)
 
 
  0.883
Si036029m
Uroporphyrinogen decarboxylase (395 aa)
   
 
0.876
Si020943m
Uncharacterized protein (2158 aa)
   
   
  0.860
Si000006m
Uncharacterized protein (2163 aa)
   
   
  0.860
Si006492m
Delta-aminolevulinic acid dehydratase (428 aa)
 
 
  0.854
Si006349m
Ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (473 aa)
 
   
  0.834
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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