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Si014107m Si014107m Si037928m Si037928m Si031428m Si031428m Si031449m Si031449m Si032841m Si032841m Si037932m Si037932m Si007477m Si007477m Si003085m Si003085m Si030555m Si030555m Si023690m Si023690m Si019343m Si019343m
"Si003085m" - 60S ribosomal protein L18a in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si003085m60S ribosomal protein L18a (178 aa)    
Predicted Functional Partners:
Si032841m
Uncharacterized protein (136 aa)
     
  0.999
Si031449m
Uncharacterized protein (141 aa)
     
  0.999
Si030555m
60S acidic ribosomal protein P0 ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (319 aa)
   
  0.998
Si014107m
60S acidic ribosomal protein P0 ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (319 aa)
   
  0.998
Si037932m
Uncharacterized protein (145 aa)
   
  0.998
Si037928m
Uncharacterized protein (145 aa)
   
  0.998
Si031428m
Uncharacterized protein (145 aa)
   
  0.998
Si007477m
Annotation not available (137 aa)
     
  0.998
Si023690m
Uncharacterized protein (112 aa)
     
  0.997
Si019343m
Uncharacterized protein (143 aa)
     
  0.997
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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