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STRINGSTRING
psbN psbN Si035707m Si035707m Si010261m Si010261m Si026480m Si026480m Si017390m Si017390m Si017614m Si017614m Si003343m Si003343m Si010287m Si010287m Si001803m Si001803m Si010312m Si010312m Si017082m Si017082m
"Si003343m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si003343mUncharacterized protein (125 aa)    
Predicted Functional Partners:
Si035707m
Glyceraldehyde-3-phosphate dehydrogenase (445 aa)
     
 
  0.740
Si010261m
Glyceraldehyde-3-phosphate dehydrogenase (401 aa)
     
 
  0.725
Si017390m
Phosphoribulokinase (403 aa)
   
 
  0.682
Si010287m
Phosphoribulokinase (394 aa)
   
 
  0.675
psbN
Photosystem II protein N; May play a role in photosystem I and II biogenesis (43 aa)
   
     
  0.655
Si017082m
Glyceraldehyde-3-phosphate dehydrogenase (476 aa)
     
 
  0.649
Si026480m
Fructose-bisphosphate aldolase (389 aa)
     
   
  0.647
Si010312m
Fructose-bisphosphate aldolase (388 aa)
     
   
  0.647
Si001803m
Fructose-bisphosphate aldolase (387 aa)
     
   
  0.646
Si017614m
Fructose-bisphosphate aldolase (358 aa)
           
  0.646
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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