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Si028714m Si028714m Si020958m Si020958m Si003760m Si003760m Si032841m Si032841m Si024055m Si024055m Si016079m Si016079m Si020966m Si020966m Si009164m Si009164m Si002998m Si002998m Si000008m Si000008m Si004105m Si004105m
"Si003760m" - E3 ubiquitin-protein ligase in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si003760mE3 ubiquitin-protein ligase ; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (318 aa)    
Predicted Functional Partners:
Si028714m
Uncharacterized protein (1271 aa)
         
  0.632
Si020958m
Uncharacterized protein (1629 aa)
       
  0.605
Si004105m
Uncharacterized protein (196 aa)
       
  0.587
Si002998m
Uncharacterized protein (195 aa)
       
  0.587
Si024055m
Uncharacterized protein (1345 aa)
         
  0.560
Si020966m
Uncharacterized protein (1533 aa)
         
  0.560
Si016079m
Uncharacterized protein (1687 aa)
         
  0.560
Si009164m
Uncharacterized protein (1806 aa)
         
  0.560
Si000008m
Uncharacterized protein (2080 aa)
         
  0.558
Si032841m
Uncharacterized protein (136 aa)
       
  0.553
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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