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Si036474m Si036474m rpl22 rpl22 Si017311m Si017311m Si003172m Si003172m Si011178m Si011178m Si004635m Si004635m Si037506m Si037506m Si014532m Si014532m Si026922m Si026922m Si003119m Si003119m Si014536m Si014536m
"Si004635m" - Peptide deformylase in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
Si004635mPeptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins (258 aa)    
Predicted Functional Partners:
Si037506m
Uncharacterized protein (209 aa)
     
 
  0.736
Si003172m
Uncharacterized protein (161 aa)
     
 
  0.736
Si017311m
DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (423 aa)
   
   
  0.651
Si026922m
Uncharacterized protein (171 aa)
     
      0.569
Si014536m
Uncharacterized protein (171 aa)
     
      0.569
Si014532m
Uncharacterized protein (171 aa)
     
      0.569
Si011178m
Uncharacterized protein (171 aa)
     
      0.569
Si003119m
Uncharacterized protein (171 aa)
     
      0.569
Si036474m
Uncharacterized protein (341 aa)
     
      0.561
rpl22
Ribosomal protein L22 (97 aa)
     
      0.561
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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