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Si028652m Si028652m Si028636m Si028636m Si023344m Si023344m SUS1 SUS1 Si006025m Si006025m Si036017m Si036017m Si033595m Si033595m Si035217m Si035217m Si009757m Si009757m Si001152m Si001152m Si022914m Si022914m
"SUS1" - Transcription and mRNA export factor SUS1 in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUS1Transcription and mRNA export factor SUS1 ; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (112 aa)    
Predicted Functional Partners:
Si023344m
SAGA-associated factor 11 (191 aa)
     
  0.975
Si009757m
Uncharacterized protein (548 aa)
       
  0.935
Si036017m
Uncharacterized protein (396 aa)
       
 
  0.889
Si028652m
Uncharacterized protein (1744 aa)
       
 
  0.889
Si028636m
Uncharacterized protein (3824 aa)
       
  0.716
Si033595m
Uncharacterized protein (157 aa)
     
  0.672
Si006025m
Uncharacterized protein (654 aa)
         
  0.658
Si035217m
Uncharacterized protein (516 aa)
         
  0.656
Si001152m
Uncharacterized protein (499 aa)
         
  0.656
Si022914m
Uncharacterized protein (278 aa)
       
  0.655
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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