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Si022939m Si022939m Si035737m Si035737m Si006296m Si006296m Si029865m Si029865m Si021763m Si021763m Si021701m Si021701m Si005831m Si005831m Si000995m Si000995m Si010718m Si010718m Si017907m Si017907m Si006469m Si006469m
"Si006296m" - 3-phosphoshikimate 1-carboxyvinyltransferase in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si006296m3-phosphoshikimate 1-carboxyvinyltransferase (498 aa)    
Predicted Functional Partners:
Si035737m
Chorismate synthase (441 aa)
 
  0.982
Si010718m
Uncharacterized protein (297 aa)
 
 
  0.982
Si017907m
Uncharacterized protein (303 aa)
 
 
  0.981
Si006469m
Uncharacterized protein (434 aa)
 
 
  0.981
Si029865m
Uncharacterized protein (438 aa)
 
  0.888
Si000995m
Uncharacterized protein (527 aa)
 
 
  0.863
Si021763m
Uncharacterized protein (520 aa)
 
 
  0.861
Si021701m
Uncharacterized protein (539 aa)
 
 
  0.860
Si022939m
Uncharacterized protein (274 aa)
     
  0.767
Si005831m
Uncharacterized protein (875 aa)
   
 
  0.749
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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