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Si038742m Si038742m Si032277m Si032277m Si029424m Si029424m Si000206m Si000206m Si007387m Si007387m Si016091m Si016091m Si013540m Si013540m Si000068m Si000068m rpoA rpoA Si018115m Si018115m Si000454m Si000454m
"Si007387m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si007387mUncharacterized protein (168 aa)    
Predicted Functional Partners:
Si000206m
Uncharacterized protein (948 aa)
   
   
  0.848
Si013540m
Uncharacterized protein (530 aa)
 
   
  0.812
Si016091m
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1480 aa)
   
 
  0.735
Si032277m
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (336 aa)
   
   
  0.518
Si000454m
Uncharacterized protein (728 aa)
   
   
  0.518
Si018115m
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
         
  0.516
rpoA
RNA polymerase alpha subunit (261 aa)
     
   
  0.499
Si038742m
Phosphoglycerate kinase (651 aa)
         
  0.475
Si029424m
Thioredoxin reductase (544 aa)
         
  0.472
Si000068m
Uncharacterized protein (1290 aa)
              0.455
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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