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Si026031m Si026031m Si019782m Si019782m Si002239m Si002239m Si001537m Si001537m Si002494m Si002494m Si028034m Si028034m Si034218m Si034218m Si009420m Si009420m Si016138m Si016138m Si037919m Si037919m Si005915m Si005915m
"Si009420m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si009420mUncharacterized protein (776 aa)    
Predicted Functional Partners:
Si016138m
Uncharacterized protein (1166 aa)
     
   
  0.622
Si019782m
Uncharacterized protein (774 aa)
     
   
  0.569
Si034218m
DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (862 aa)
     
   
  0.564
Si001537m
Uncharacterized protein (429 aa)
           
  0.487
Si005915m
Uncharacterized protein (759 aa)
     
   
  0.473
Si002494m
Uncharacterized protein (282 aa)
     
   
  0.451
Si037919m
Uncharacterized protein (147 aa)
           
  0.440
Si026031m
Uncharacterized protein (712 aa)
     
   
  0.419
Si028034m
Uncharacterized protein (660 aa)
     
   
  0.415
Si002239m
Uncharacterized protein (323 aa)
     
   
  0.412
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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