Full Link:
STRINGSTRING
Si013356m Si013356m Si034346m Si034346m Si013520m Si013520m Si026336m Si026336m Si029128m Si029128m Si000970m Si000970m Si029695m Si029695m Si009538m Si009538m Si033837m Si033837m Si016715m Si016715m Si021118m Si021118m
"Si009538m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si009538mUncharacterized protein (680 aa)    
Predicted Functional Partners:
Si013520m
Uncharacterized protein (545 aa)
   
   
  0.617
Si021118m
Uncharacterized protein (941 aa)
       
      0.541
Si016715m
Uncharacterized protein (593 aa)
       
      0.541
Si029128m
Ribosome biogenesis protein BOP1 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (680 aa)
     
   
  0.520
Si013356m
Ribosome biogenesis protein BOP1 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (681 aa)
     
   
  0.520
Si029695m
Uncharacterized protein (479 aa)
   
   
  0.515
Si026336m
Uncharacterized protein (462 aa)
   
   
  0.515
Si000970m
Uncharacterized protein (535 aa)
   
   
  0.515
Si034346m
Lysyl-tRNA synthetase (767 aa)
   
        0.496
Si033837m
Uncharacterized protein (2266 aa)
   
        0.494
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
Server load: low (2%)