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Si036641m Si036641m Si000942m Si000942m Si029287m Si029287m Si039580m Si039580m Si022230m Si022230m Si010221m Si010221m Si024215m Si024215m Si019694m Si019694m Si000786m Si000786m Si004506m Si004506m Si004863m Si004863m
"Si010221m" - Pectate lyase in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si010221mPectate lyase (415 aa)    
Predicted Functional Partners:
Si039580m
Pectinesterase (328 aa)
 
   
  0.931
Si019694m
Pectinesterase (386 aa)
 
   
  0.931
Si036641m
Pectinesterase (322 aa)
 
   
  0.930
Si024215m
Pectinesterase (425 aa)
 
   
  0.930
Si022230m
Pectinesterase (401 aa)
 
   
  0.930
Si004863m
Pectinesterase (387 aa)
 
   
  0.930
Si000942m
Pectinesterase (541 aa)
 
   
  0.930
Si004506m
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (322 aa)
 
   
  0.930
Si000786m
Pectinesterase (589 aa)
 
   
  0.930
Si029287m
Pectinesterase (598 aa)
 
 
  0.930
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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