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psbE psbE Si008469m Si008469m Si020864m Si020864m psaA psaA Si002811m Si002811m Si020848m Si020848m Si020875m Si020875m Si011744m Si011744m Si019827m Si019827m Si005073m Si005073m Si012451m Si012451m
"Si012451m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si012451mUncharacterized protein (163 aa)    
Predicted Functional Partners:
Si019827m
Uncharacterized protein (74 aa)
   
          0.525
Si008469m
Uncharacterized protein (142 aa)
   
          0.525
Si005073m
Uncharacterized protein (153 aa)
   
          0.525
psbE
Photosystem II cytochrome b559 alpha subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water-plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation (83 aa)
   
          0.522
Si020864m
Annotation not available (83 aa)
   
          0.522
Si020848m
Uncharacterized protein (596 aa)
   
          0.517
Si011744m
Uncharacterized protein (116 aa)
   
          0.514
psaA
Photosystem I P700 apoprotein A1 (703 aa)
   
          0.508
Si020875m
Photosystem II CP47 reaction center protein ; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (478 aa)
   
          0.503
Si002811m
Photosystem II reaction center Psb28 protein (227 aa)
   
          0.487
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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