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Si013128m Si013128m Si033950m Si033950m Si039634m Si039634m Si037640m Si037640m Si021349m Si021349m Si013247m Si013247m Si033113m Si033113m Si009201m Si009201m rpoA rpoA Si016141m Si016141m Si020876m Si020876m
"Si013247m" - DNA-directed RNA polymerase subunit in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si013247mDNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (860 aa)    
Predicted Functional Partners:
Si013128m
DNA-directed RNA polymerase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1257 aa)
 
  0.999
Si009201m
DNA-directed RNA polymerase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1234 aa)
 
  0.998
Si033950m
DNA-directed RNA polymerase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1226 aa)
 
  0.998
Si020876m
Uncharacterized protein (876 aa)
 
  0.998
Si016141m
DNA-directed RNA polymerase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1154 aa)
 
  0.997
Si021349m
Uncharacterized protein (711 aa)
   
  0.996
Si037640m
Uncharacterized protein (192 aa)
 
  0.995
Si039634m
Uncharacterized protein (156 aa)
   
  0.994
Si033113m
Uncharacterized protein (230 aa)
   
  0.985
rpoA
RNA polymerase alpha subunit (261 aa)
   
  0.975
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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