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Si006010m Si006010m Si034563m Si034563m Si029128m Si029128m Si021231m Si021231m Si034104m Si034104m Si009391m Si009391m Si013699m Si013699m Si004404m Si004404m Si034692m Si034692m Si013356m Si013356m Si013399m Si013399m
"Si013399m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si013399mUncharacterized protein (643 aa)    
Predicted Functional Partners:
Si034692m
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (626 aa)
     
 
  0.951
Si034563m
Uncharacterized protein (666 aa)
     
      0.950
Si034104m
Uncharacterized protein (956 aa)
     
 
  0.941
Si029128m
Ribosome biogenesis protein BOP1 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (680 aa)
     
 
  0.938
Si013356m
Ribosome biogenesis protein BOP1 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (681 aa)
     
 
  0.938
Si021231m
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (822 aa)
   
 
  0.937
Si009391m
Uncharacterized protein (798 aa)
     
 
  0.936
Si013699m
Uncharacterized protein (463 aa)
     
 
  0.928
Si006010m
Nucleolar GTP-binding protein 1 ; Involved in the biogenesis of the 60S ribosomal subunit (667 aa)
     
 
  0.928
Si004404m
Uncharacterized protein (637 aa)
     
 
  0.928
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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