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Si040062m Si040062m Si011100m Si011100m Si028249m Si028249m Si028305m Si028305m Si013423m Si013423m Si026854m Si026854m Si006524m Si006524m Si027794m Si027794m Si014145m Si014145m Si006858m Si006858m Si011242m Si011242m
"Si013423m" - D-3-phosphoglycerate dehydrogenase in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si013423mD-3-phosphoglycerate dehydrogenase (621 aa)    
Predicted Functional Partners:
Si040062m
Phosphoserine aminotransferase (415 aa)
   
  0.990
Si006524m
Uncharacterized protein (420 aa)
         
    0.919
Si028249m
Uncharacterized protein (524 aa)
   
 
  0.912
Si027794m
Uncharacterized protein (315 aa)
   
 
  0.912
Si014145m
Uncharacterized protein (304 aa)
   
 
  0.912
Si011100m
Uncharacterized protein (197 aa)
   
 
  0.912
Si028305m
Uncharacterized protein (124 aa)
       
  0.908
Si026854m
Uncharacterized protein (210 aa)
       
  0.908
Si011242m
Uncharacterized protein (151 aa)
       
  0.908
Si006858m
Uncharacterized protein (333 aa)
       
  0.908
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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