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Si036082m Si036082m Si030331m Si030331m Si033895m Si033895m Si035655m Si035655m Si033896m Si033896m Si013523m Si013523m rpoA rpoA Si000061m Si000061m Si021996m Si021996m Si013520m Si013520m Si019925m Si019925m
"Si013523m" - Peptidase M in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
Si013523mPeptidase M ; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (543 aa)    
Predicted Functional Partners:
rpoA
RNA polymerase alpha subunit (261 aa)
   
   
  0.779
Si019925m
Uncharacterized protein (347 aa)
     
 
  0.741
Si021996m
Uncharacterized protein (459 aa)
   
   
  0.725
Si033896m
Uncharacterized protein (1418 aa)
   
   
  0.715
Si033895m
Uncharacterized protein (1418 aa)
   
   
  0.715
Si000061m
Uncharacterized protein (1340 aa)
   
   
  0.715
Si035655m
Elongation factor Tu ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (451 aa)
   
   
  0.693
Si013520m
Uncharacterized protein (545 aa)
   
   
  0.682
Si036082m
Uncharacterized protein (390 aa)
     
 
  0.681
Si030331m
Uncharacterized protein (352 aa)
     
 
  0.681
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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