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Si022946m Si022946m Si025180m Si025180m Si017953m Si017953m Si023069m Si023069m Si007209m Si007209m Si022975m Si022975m Si016147m Si016147m Si003010m Si003010m Si025271m Si025271m Si018481m Si018481m Si007373m Si007373m
"Si016147m" - Auxin response factor in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Experiments
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Textmining
[Homology]
Score
Si016147mAuxin response factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1133 aa)    
Predicted Functional Partners:
Si017953m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (294 aa)
       
 
  0.910
Si025180m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (209 aa)
       
 
0.886
Si022975m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (264 aa)
       
 
  0.882
Si025271m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (163 aa)
       
 
  0.875
Si003010m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (193 aa)
       
 
0.875
Si023069m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (247 aa)
       
 
  0.860
Si007209m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (232 aa)
       
 
  0.860
Si018481m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (175 aa)
       
 
0.834
Si007373m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (174 aa)
       
 
0.834
Si022946m
Auxin-responsive protein ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (273 aa)
       
 
  0.791
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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