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Si002397m Si002397m Si022214m Si022214m Si026107m Si026107m Si009603m Si009603m Si020943m Si020943m Si016949m Si016949m Si000006m Si000006m Si017536m Si017536m Si018190m Si018190m Si001950m Si001950m Si010358m Si010358m
"Si016949m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si016949mUncharacterized protein (509 aa)    
Predicted Functional Partners:
Si022214m
3-isopropylmalate dehydrogenase ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (405 aa)
 
  0.998
Si018190m
Uncharacterized protein (247 aa)
 
  0.995
Si009603m
Uncharacterized protein (631 aa)
 
  0.991
Si026107m
Uncharacterized protein (635 aa)
 
  0.991
Si010358m
Uncharacterized protein (377 aa)
 
  0.980
Si017536m
Uncharacterized protein (375 aa)
 
  0.980
Si001950m
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (365 aa)
 
  0.980
Si020943m
Uncharacterized protein (2158 aa)
   
 
  0.874
Si000006m
Uncharacterized protein (2163 aa)
   
 
  0.874
Si002397m
Uncharacterized protein (299 aa)
         
  0.856
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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