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Si020194m Si020194m Si017631m Si017631m Si037100m Si037100m Si036255m Si036255m Si019265m Si019265m Si037089m Si037089m Si026275m Si026275m Si031498m Si031498m Si010818m Si010818m Si005771m Si005771m Si025891m Si025891m
"Si019265m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si019265mUncharacterized protein (584 aa)    
Predicted Functional Partners:
Si031498m
Uncharacterized protein (130 aa)
     
  0.704
Si025891m
Uncharacterized protein (1008 aa)
     
  0.704
Si005771m
Uncharacterized protein (999 aa)
     
  0.704
Si037100m
Uncharacterized protein (260 aa)
     
  0.646
Si037089m
Uncharacterized protein (261 aa)
     
  0.646
Si036255m
DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (370 aa)
     
  0.646
Si026275m
Uncharacterized protein (493 aa)
     
  0.646
Si010818m
Uncharacterized protein (273 aa)
     
  0.646
Si020194m
Uncharacterized protein (949 aa)
     
  0.537
Si017631m
Uncharacterized protein (356 aa)
     
  0.537
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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