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Si039628m Si039628m Si033890m Si033890m Si033879m Si033879m Si039548m Si039548m Si021388m Si021388m Si004808m Si004808m Si016091m Si016091m Si021001m Si021001m Si039047m Si039047m Si028691m Si028691m Si001993m Si001993m
"Si021388m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si021388mUncharacterized protein (680 aa)    
Predicted Functional Partners:
Si033890m
Uncharacterized protein (1480 aa)
   
  0.978
Si033879m
Uncharacterized protein (1564 aa)
   
  0.978
Si004808m
Uncharacterized protein (360 aa)
     
  0.951
Si039628m
Histone H2A (359 aa)
     
  0.937
Si039047m
Cytosine-specific methyltransferase (1493 aa)
   
  0.931
Si028691m
Cytosine-specific methyltransferase (1377 aa)
   
  0.931
Si021001m
Uncharacterized protein (1274 aa)
   
  0.929
Si001993m
Uncharacterized protein (358 aa)
   
  0.929
Si039548m
Uncharacterized protein (307 aa)
     
 
    0.902
Si016091m
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1480 aa)
   
 
  0.856
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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