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Si035005m Si035005m Si029271m Si029271m Si013520m Si013520m Si029885m Si029885m Si021072m Si021072m Si022135m Si022135m Si039634m Si039634m Si021267m Si021267m Si022093m Si022093m Si021231m Si021231m Si010020m Si010020m
"Si022135m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si022135mUncharacterized protein (425 aa)    
Predicted Functional Partners:
Si029885m
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (435 aa)
     
        0.962
Si022093m
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (435 aa)
     
        0.962
Si035005m
Uncharacterized protein (552 aa)
   
        0.876
Si029271m
Uncharacterized protein (603 aa)
   
        0.876
Si021231m
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (822 aa)
     
 
  0.864
Si010020m
Uncharacterized protein (471 aa)
     
   
  0.857
Si013520m
Uncharacterized protein (545 aa)
     
        0.829
Si021267m
Uncharacterized protein (790 aa)
     
        0.827
Si021072m
Uncharacterized protein (1024 aa)
     
        0.826
Si039634m
Uncharacterized protein (156 aa)
     
        0.824
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Paniceae, S. italica, Setaria, Setaria P.Beauv., Setaria italica, Setaria italica (L.) P.Beauv., foxtail millet
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