(7 nodes) Protein patched/dispatched, and Intimal thickness related receptor, IRP network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Disp1	Protein dispatched-like 1. (1551 aa)
	I79_000393	Zinc finger protein DZIP1. (782 aa)
	Gpr180	Integral membrane protein GPR180. (378 aa)
	Ptchd1	Patched domain-containing protein 1. (771 aa)
	I79_016206	Patched domain-containing protein C6orf138. (207 aa)
	Ptchd4	Patched domain-containing protein C6orf138. (510 aa)
	I79_024287	Patched domain-containing protein 2. (1247 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Disp1	I79_000393	G3GRB8	G3GS79	Protein dispatched-like 1.	Zinc finger protein DZIP1.	0.561
I79_000393	Disp1	G3GS79	G3GRB8	Zinc finger protein DZIP1.	Protein dispatched-like 1.	0.561
I79_016206	Ptchd4	G3HYR5	G3HYR6	Patched domain-containing protein C6orf138.	Patched domain-containing protein C6orf138.	0.899
I79_024287	Ptchd1	G3IK91	G3H545	Patched domain-containing protein 2.	Patched domain-containing protein 1.	0.436
Ptchd1	I79_024287	G3H545	G3IK91	Patched domain-containing protein 1.	Patched domain-containing protein 2.	0.436
Ptchd4	I79_016206	G3HYR6	G3HYR5	Patched domain-containing protein C6orf138.	Patched domain-containing protein C6orf138.	0.899