(18 nodes) Mixed, incl. Retinoic acid receptor signaling pathway, and Lipid transport across blood-brain barrier network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rxrg	Retinoic acid receptor RXR-gamma isoform X1. (463 aa)
	Rarb	Retinoic acid receptor beta isoform X1. (448 aa)
	Rarg	Retinoic acid receptor gamma. (457 aa)
	Ppard	Peroxisome proliferator-activated receptor delta. (440 aa)
	Rxrb	Retinoic acid receptor RXR-beta isoform X1. (527 aa)
	Pax8	Paired box protein Pax-8. (457 aa)
	Rxra	Retinoic acid receptor RXR-alpha isoform X1. (457 aa)
	Slc27a4	Solute carrier family 27 (fatty acid transporter), member 1/4. (643 aa)
	Nr1h3	Oxysterols receptor LXR-alpha isoform X1. (445 aa)
	Fabp5	Fatty acid-binding protein, epidermal isoform X1. (135 aa)
	Fabp9	Fatty acid-binding protein 4, adipocyte. (142 aa)
	Fabp4	Fatty acid-binding protein 4, adipocyte. (132 aa)
	Crabp2	Cellular retinoic acid-binding protein 2 isoform X1. (138 aa)
	Fabp3	Fatty acid-binding protein 3, muscle and heart. (133 aa)
	Pparg	Peroxisome proliferator-activated receptor gamma isoform X1. (505 aa)
	Nr1h2	Oxysterols receptor LXR-beta isoform X1. (446 aa)
	Slc27a1	Solute carrier family 27 (fatty acid transporter), member 1/4. (657 aa)
	Crabp1	Cellular retinoic acid-binding protein 1 isoform X1. (137 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Crabp1	Rarb	MGP_CAROLIEiJ_P0087919	MGP_CAROLIEiJ_P0035669	Cellular retinoic acid-binding protein 1 isoform X1.	Retinoic acid receptor beta isoform X1.	0.713
Crabp1	Rarg	MGP_CAROLIEiJ_P0087919	MGP_CAROLIEiJ_P0039966	Cellular retinoic acid-binding protein 1 isoform X1.	Retinoic acid receptor gamma.	0.561
Crabp1	Rxra	MGP_CAROLIEiJ_P0087919	MGP_CAROLIEiJ_P0050528	Cellular retinoic acid-binding protein 1 isoform X1.	Retinoic acid receptor RXR-alpha isoform X1.	0.416
Crabp1	Rxrb	MGP_CAROLIEiJ_P0087919	MGP_CAROLIEiJ_P0044127	Cellular retinoic acid-binding protein 1 isoform X1.	Retinoic acid receptor RXR-beta isoform X1.	0.436
Crabp2	Ppard	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0043608	Cellular retinoic acid-binding protein 2 isoform X1.	Peroxisome proliferator-activated receptor delta.	0.731
Crabp2	Pparg	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0075565	Cellular retinoic acid-binding protein 2 isoform X1.	Peroxisome proliferator-activated receptor gamma isoform X1.	0.534
Crabp2	Rarb	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0035669	Cellular retinoic acid-binding protein 2 isoform X1.	Retinoic acid receptor beta isoform X1.	0.795
Crabp2	Rarg	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0039966	Cellular retinoic acid-binding protein 2 isoform X1.	Retinoic acid receptor gamma.	0.696
Crabp2	Rxra	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0050528	Cellular retinoic acid-binding protein 2 isoform X1.	Retinoic acid receptor RXR-alpha isoform X1.	0.474
Crabp2	Rxrb	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0044127	Cellular retinoic acid-binding protein 2 isoform X1.	Retinoic acid receptor RXR-beta isoform X1.	0.598
Crabp2	Rxrg	MGP_CAROLIEiJ_P0058326	MGP_CAROLIEiJ_P0021013	Cellular retinoic acid-binding protein 2 isoform X1.	Retinoic acid receptor RXR-gamma isoform X1.	0.491
Fabp3	Ppard	MGP_CAROLIEiJ_P0064738	MGP_CAROLIEiJ_P0043608	Fatty acid-binding protein 3, muscle and heart.	Peroxisome proliferator-activated receptor delta.	0.567
Fabp3	Pparg	MGP_CAROLIEiJ_P0064738	MGP_CAROLIEiJ_P0075565	Fatty acid-binding protein 3, muscle and heart.	Peroxisome proliferator-activated receptor gamma isoform X1.	0.538
Fabp3	Slc27a1	MGP_CAROLIEiJ_P0064738	MGP_CAROLIEiJ_P0084925	Fatty acid-binding protein 3, muscle and heart.	Solute carrier family 27 (fatty acid transporter), member 1/4.	0.559
Fabp3	Slc27a4	MGP_CAROLIEiJ_P0064738	MGP_CAROLIEiJ_P0050667	Fatty acid-binding protein 3, muscle and heart.	Solute carrier family 27 (fatty acid transporter), member 1/4.	0.411
Fabp4	Fabp9	MGP_CAROLIEiJ_P0056910	MGP_CAROLIEiJ_P0056908	Fatty acid-binding protein 4, adipocyte.	Fatty acid-binding protein 4, adipocyte.	0.902
Fabp4	Nr1h3	MGP_CAROLIEiJ_P0056910	MGP_CAROLIEiJ_P0053038	Fatty acid-binding protein 4, adipocyte.	Oxysterols receptor LXR-alpha isoform X1.	0.456
Fabp4	Ppard	MGP_CAROLIEiJ_P0056910	MGP_CAROLIEiJ_P0043608	Fatty acid-binding protein 4, adipocyte.	Peroxisome proliferator-activated receptor delta.	0.741
Fabp4	Pparg	MGP_CAROLIEiJ_P0056910	MGP_CAROLIEiJ_P0075565	Fatty acid-binding protein 4, adipocyte.	Peroxisome proliferator-activated receptor gamma isoform X1.	0.788
Fabp4	Rxra	MGP_CAROLIEiJ_P0056910	MGP_CAROLIEiJ_P0050528	Fatty acid-binding protein 4, adipocyte.	Retinoic acid receptor RXR-alpha isoform X1.	0.438