(50 nodes) Cleavage furrow network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rdx	Radixin isoform X1. (583 aa)
	Sept6	Septin-6 isoform X1. (434 aa)
	MGP_CAROLIEiJ_P0089921	Ras homolog gene family, member A. (67 aa)
	Rab11a	Ras-related protein Rab-11A. (216 aa)
	Septin2	Septin 2. (361 aa)
	Hmcn1	Hemicentin-1. (5634 aa)
	Ankrd45	Ankyrin repeat domain-containing protein 45. (248 aa)
	Rab21	Ras-related protein Rab-21. (223 aa)
	Nf2	Merlin isoform X1. (596 aa)
	Myh10	Myosin heavy chain 9/10/11/14. (1965 aa)
	Rab11fip4	Rab11 family-interacting protein 4 isoform X1. (635 aa)
	Plcd3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3. (785 aa)
	Icam2	Intercellular adhesion molecule 2 isoform X1. (277 aa)
	Rhob	Rho-related GTP-binding protein RhoB. (196 aa)
	Arf6	ADP-ribosylation factor 6. (175 aa)
	Rala	Ras-related protein Ral-A. (206 aa)
	Myh9	Myosin heavy chain 9/10/11/14. (1960 aa)
	Racgap1	Rac GTPase-activating protein 1. (628 aa)
	Lima1	LIM domain and actin-binding protein 1. (754 aa)
	Nde1	Nuclear distribution protein nudE homolog 1 isoform X1. (344 aa)
	Mylk	Myosin light chain kinase, smooth muscle. (1949 aa)
	Rab11fip3	Rab11 family-interacting protein 3 isoform X1. (1128 aa)
	Fsd1	Fibronectin type III and SPRY domain-containing protein 1. (496 aa)
	Svil	Supervillin. (2258 aa)
	Psd2	PH and SEC7 domain-containing protein 2 isoform X1. (769 aa)
	Spire1	Spire type actin nucleation factor 1. (600 aa)
	Pitpnm1	Membrane-associated phosphatidylinositol transfer protein 1 isoform X1. (1242 aa)
	Men1	Menin isoform X1. (617 aa)
	Cep55	Centrosomal protein of 55 kDa. (461 aa)
	Psd	PH and SEC7 domain-containing protein 1 isoform X1. (1025 aa)
	MGP_CAROLIEiJ_P0049903	annotation not available (677 aa)
	Hmcn2	Hemicentin-2. (5100 aa)
	Katnbl1	KATNB1-like protein 1. (299 aa)
	Zfyve19	Abscission/NoCut checkpoint regulator isoform X1. (389 aa)
	MGP_CAROLIEiJ_P0057083	annotation not available (188 aa)
	Plk4	Serine/threonine-protein kinase PLK4. (926 aa)
	Rhoc	Rho-related GTP-binding protein RhoC. (193 aa)
	Pkn2	Serine/threonine-protein kinase N2. (983 aa)
	Dctn3	Dynactin subunit 3. (186 aa)
	Ssh1	Protein phosphatase Slingshot homolog 1. (1042 aa)
	Cit	Citron rho-interacting serine/threonine kinase. (2070 aa)
	Olfr13	Olfactory receptor 13. (310 aa)
	4930544G11Rik	RIKEN cDNA 4930544G11 gene. (193 aa)
	Stambp	STAM-binding protein. (424 aa)
	Wdr73	WD repeat domain 73. (239 aa)
	Spn	Leukosialin. (386 aa)
	Pkn1	Serine/threonine-protein kinase N1. (951 aa)
	Sept7	Septin-7 isoform X1. (454 aa)
	Htr3a	5-hydroxytryptamine receptor 3A isoform X1. (489 aa)
	Pstpip1	Proline-serine-threonine phosphatase interacting protein 1. (416 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4930544G11Rik	Cit	MGP_CAROLIEiJ_P0074151	MGP_CAROLIEiJ_P0070202	RIKEN cDNA 4930544G11 gene.	Citron rho-interacting serine/threonine kinase.	0.614
4930544G11Rik	MGP_CAROLIEiJ_P0057083	MGP_CAROLIEiJ_P0074151	MGP_CAROLIEiJ_P0057083	RIKEN cDNA 4930544G11 gene.	annotation not available	0.679
4930544G11Rik	Pkn1	MGP_CAROLIEiJ_P0074151	MGP_CAROLIEiJ_P0085158	RIKEN cDNA 4930544G11 gene.	Serine/threonine-protein kinase N1.	0.754
4930544G11Rik	Pkn2	MGP_CAROLIEiJ_P0074151	MGP_CAROLIEiJ_P0060830	RIKEN cDNA 4930544G11 gene.	Serine/threonine-protein kinase N2.	0.654
4930544G11Rik	Racgap1	MGP_CAROLIEiJ_P0074151	MGP_CAROLIEiJ_P0039781	RIKEN cDNA 4930544G11 gene.	Rac GTPase-activating protein 1.	0.613
Ankrd45	Men1	MGP_CAROLIEiJ_P0020723	MGP_CAROLIEiJ_P0047794	Ankyrin repeat domain-containing protein 45.	Menin isoform X1.	0.513
Arf6	Psd	MGP_CAROLIEiJ_P0032416	MGP_CAROLIEiJ_P0049028	ADP-ribosylation factor 6.	PH and SEC7 domain-containing protein 1 isoform X1.	0.692
Arf6	Rab11a	MGP_CAROLIEiJ_P0032416	MGP_CAROLIEiJ_P0088324	ADP-ribosylation factor 6.	Ras-related protein Rab-11A.	0.678
Arf6	Rab11fip3	MGP_CAROLIEiJ_P0032416	MGP_CAROLIEiJ_P0043411	ADP-ribosylation factor 6.	Rab11 family-interacting protein 3 isoform X1.	0.760
Arf6	Rab11fip4	MGP_CAROLIEiJ_P0032416	MGP_CAROLIEiJ_P0028655	ADP-ribosylation factor 6.	Rab11 family-interacting protein 4 isoform X1.	0.555
Arf6	Rab21	MGP_CAROLIEiJ_P0032416	MGP_CAROLIEiJ_P0024761	ADP-ribosylation factor 6.	Ras-related protein Rab-21.	0.425
Arf6	Rala	MGP_CAROLIEiJ_P0032416	MGP_CAROLIEiJ_P0033737	ADP-ribosylation factor 6.	Ras-related protein Ral-A.	0.519
Cep55	MGP_CAROLIEiJ_P0057083	MGP_CAROLIEiJ_P0048682	MGP_CAROLIEiJ_P0057083	Centrosomal protein of 55 kDa.	annotation not available	0.740
Cep55	Plk4	MGP_CAROLIEiJ_P0048682	MGP_CAROLIEiJ_P0057472	Centrosomal protein of 55 kDa.	Serine/threonine-protein kinase PLK4.	0.608
Cep55	Racgap1	MGP_CAROLIEiJ_P0048682	MGP_CAROLIEiJ_P0039781	Centrosomal protein of 55 kDa.	Rac GTPase-activating protein 1.	0.842
Cit	4930544G11Rik	MGP_CAROLIEiJ_P0070202	MGP_CAROLIEiJ_P0074151	Citron rho-interacting serine/threonine kinase.	RIKEN cDNA 4930544G11 gene.	0.614
Cit	MGP_CAROLIEiJ_P0057083	MGP_CAROLIEiJ_P0070202	MGP_CAROLIEiJ_P0057083	Citron rho-interacting serine/threonine kinase.	annotation not available	0.533
Cit	MGP_CAROLIEiJ_P0089921	MGP_CAROLIEiJ_P0070202	MGP_CAROLIEiJ_P0089921	Citron rho-interacting serine/threonine kinase.	Ras homolog gene family, member A.	0.541
Cit	Racgap1	MGP_CAROLIEiJ_P0070202	MGP_CAROLIEiJ_P0039781	Citron rho-interacting serine/threonine kinase.	Rac GTPase-activating protein 1.	0.565
Cit	Rhob	MGP_CAROLIEiJ_P0070202	MGP_CAROLIEiJ_P0031872	Citron rho-interacting serine/threonine kinase.	Rho-related GTP-binding protein RhoB.	0.523