(24 nodes) Myosin II complex network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Myl3	Myosin light chain 3. (204 aa)
	Myh10	Myosin heavy chain 9/10/11/14. (1965 aa)
	Myo18a	Unconventional myosin-XVIIIa isoform X1. (2083 aa)
	Myl4	Myosin light chain 4. (192 aa)
	Myh6	Myosin heavy chain 6/7. (1954 aa)
	Myh7	Myosin heavy chain 6/7. (1935 aa)
	Myh9	Myosin heavy chain 9/10/11/14. (1960 aa)
	Myl6	Myosin light polypeptide 6 isoform X1. (151 aa)
	Myh3	Myosin, heavy polypeptide 3, skeletal muscle, embryonic. (1800 aa)
	Myh2	Myosin, heavy polypeptide 2, skeletal muscle, adult. (2025 aa)
	MGP_CAROLIEiJ_P0027339	annotation not available (95 aa)
	Myh4	Myosin heavy chain 1/2/3/4/8/13/7B/15. (1939 aa)
	Myh8	Myosin heavy chain 1/2/3/4/8/13/7B/15. (1937 aa)
	Myh11	Myosin heavy chain 9/10/11/14. (1979 aa)
	Myh15	Myosin heavy chain 1/2/3/4/8/13/7B/15. (1925 aa)
	Myl12b	Myosin regulatory light chain 12B. (172 aa)
	Myl12a	Myosin regulatory light chain RLC-A. (172 aa)
	Ttn	Titin. (32000 aa)
	Myh7b	Myosin heavy chain 1/2/3/4/8/13/7B/15. (1941 aa)
	Myl9	Myosin regulatory light polypeptide 9. (172 aa)
	Limch1	LIM and calponin homology domains-containing protein 1 isoform X1. (1068 aa)
	Myo18b	Unconventional myosin-XVIIIb. (2558 aa)
	Myh14	Myosin heavy chain 9/10/11/14. (2018 aa)
	Myh14-2	Myosin heavy chain 14. (1998 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Limch1	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0027339	LIM and calponin homology domains-containing protein 1 isoform X1.	annotation not available	0.549
Limch1	Myh10	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0027403	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 9/10/11/14.	0.564
Limch1	Myh11	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0040478	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 9/10/11/14.	0.562
Limch1	Myh14	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0079339	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 9/10/11/14.	0.604
Limch1	Myh14-2	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0079340	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 14.	0.432
Limch1	Myh2	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0027335	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin, heavy polypeptide 2, skeletal muscle, adult.	0.549
Limch1	Myh6	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0036744	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 6/7.	0.549
Limch1	Myh7	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0036750	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 6/7.	0.549
Limch1	Myh9	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0038799	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin heavy chain 9/10/11/14.	0.595
Limch1	Myl12a	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0045558	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin regulatory light chain RLC-A.	0.583
Limch1	Myl12b	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0045555	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin regulatory light chain 12B.	0.405
Limch1	Myl9	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0055710	LIM and calponin homology domains-containing protein 1 isoform X1.	Myosin regulatory light polypeptide 9.	0.576
Limch1	Ttn	MGP_CAROLIEiJ_P0068425	MGP_CAROLIEiJ_P0052432	LIM and calponin homology domains-containing protein 1 isoform X1.	Titin.	0.561
MGP_CAROLIEiJ_P0027339	Limch1	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0068425	annotation not available	LIM and calponin homology domains-containing protein 1 isoform X1.	0.549
MGP_CAROLIEiJ_P0027339	Myh10	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0027403	annotation not available	Myosin heavy chain 9/10/11/14.	0.777
MGP_CAROLIEiJ_P0027339	Myh11	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0040478	annotation not available	Myosin heavy chain 9/10/11/14.	0.583
MGP_CAROLIEiJ_P0027339	Myh14	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0079339	annotation not available	Myosin heavy chain 9/10/11/14.	0.570
MGP_CAROLIEiJ_P0027339	Myh2	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0027335	annotation not available	Myosin, heavy polypeptide 2, skeletal muscle, adult.	0.968
MGP_CAROLIEiJ_P0027339	Myh3	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0027332	annotation not available	Myosin, heavy polypeptide 3, skeletal muscle, embryonic.	0.472
MGP_CAROLIEiJ_P0027339	Myh4	MGP_CAROLIEiJ_P0027339	MGP_CAROLIEiJ_P0027340	annotation not available	Myosin heavy chain 1/2/3/4/8/13/7B/15.	0.926