STRINGSTRING
Rpl10a Rpl10a Rpl24 Rpl24 Rpl23 Rpl23 Rps29 Rps29 Rps27a Rps27a Rpl19 Rpl19 Rpl34 Rpl34 Rpl7 Rpl7 LOC100911372 LOC100911372 Rpl15 Rpl15 Rpl4 Rpl4 Rpl32 Rpl32 Rpl22 Rpl22 Rps3a Rps3a Rpl35 Rpl35 Rpl27a Rpl27a Rps2 Rps2 Rpl13 Rpl13 Rps12 Rps12 Rps23 Rps23 Rps27 Rps27 Rps3 Rps3 Rpsa Rpsa Rpl18a Rpl18a Rps5 Rps5 Rps16 Rps16 Rps19 Rps19 Rpl13a Rpl13a Rpl27 Rpl27 Fau Fau Rpl18 Rpl18 Rps25 Rps25 LOC687780 LOC687780 Rps15 Rps15 Rpl5 Rpl5 Rps13 Rps13 LOC100360781 LOC100360781 Rpl17-2 Rpl17-2 ENSRNOP00000040703 ENSRNOP00000040703 LOC687780-2 LOC687780-2 Rps21-2 Rps21-2 ENSRNOP00000043270 ENSRNOP00000043270 Rps10l1 Rps10l1 Rps4x Rps4x LOC108350501 LOC108350501 LOC100360117 LOC100360117 Rps18l1 Rps18l1 LOC100361756 LOC100361756 Rps27a-2 Rps27a-2 LOC100363469 LOC100363469 Rpl30 Rpl30 Rpl28 Rpl28 Rps14 Rps14 Rps24 Rps24 Rps28 Rps28 Rpl3 Rpl3 Rps11 Rps11 RGD1561635 RGD1561635 LOC100359951 LOC100359951 LOC100362684 LOC100362684 Rps4x-2 Rps4x-2 LOC100359951-2 LOC100359951-2 Rpl10 Rpl10 Rpl11 Rpl11 Rpl14 Rpl14 Rps8 Rps8 Rps9 Rps9 Rps18 Rps18 Rps15a Rps15a Rps7 Rps7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpl10a60S ribosomal protein L10a; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL1 family. (217 aa)
Rpl2460S ribosomal protein L24; Belongs to the eukaryotic ribosomal protein eL24 family. (156 aa)
Rpl2360S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
Rps2940S ribosomal protein S29. (56 aa)
Rps27aUbiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...] (156 aa)
Rpl1960S ribosomal protein L19. (196 aa)
Rpl3460S ribosomal protein L34; Component of the large ribosomal subunit. (117 aa)
Rpl760S ribosomal protein L7; Component of the large ribosomal subunit (By similarity). Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs (By similarity); Belongs to the universal ribosomal protein uL30 family. (260 aa)
LOC10091137240S ribosomal protein S6; May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA. (247 aa)
Rpl1560S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
Rpl460S ribosomal protein L4; Belongs to the universal ribosomal protein uL4 family. (421 aa)
Rpl3260S ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family. (135 aa)
Rpl2260S ribosomal protein L22. (128 aa)
Rps3a40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3. (264 aa)
Rpl3560S ribosomal protein L35; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL29 family. (123 aa)
Rpl27a60S ribosomal protein L27a. (148 aa)
Rps240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (293 aa)
Rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
Rps1240S ribosomal protein S12. (132 aa)
Rps2340S ribosomal protein S23; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...] (143 aa)
Rps2740S ribosomal protein S27; Component of the small ribosomal subunit (By similarity). Required for proper rRNA processing and maturation of 18S rRNAs (By similarity); Belongs to the eukaryotic ribosomal protein eS27 family. (84 aa)
Rps340S ribosomal protein S3; Involved in translation as a component of the 40S small ribosomal subunit (By similarity). Has endonuclease activity and plays a role in repair of damaged DNA. Cleaves phosphodiester bonds of DNAs containing altered bases with broad specificity and cleaves supercoiled DNA more efficiently than relaxed DNA (By similarity). Displays high binding affinity for 7,8-dihydro-8- oxoguanine (8-oxoG), a common DNA lesion caused by reactive oxygen species (ROS) (By similarity). Has also been shown to bind with similar affinity to intact and damaged DNA (By similarity). S [...] (243 aa)
Rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
Rpl18a60S ribosomal protein L18a. (176 aa)
Rps540S ribosomal protein S5, N-terminally processed; Belongs to the universal ribosomal protein uS7 family. (204 aa)
Rps1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
Rps1940S ribosomal protein S19; Required for pre-rRNA processing and maturation of 40S ribosomal subunits; Belongs to the eukaryotic ribosomal protein eS19 family. (145 aa)
Rpl13a60S ribosomal protein L13a; Associated with ribosomes but is not required for canonical ribosome function and has extra-ribosomal functions Component of the GAIT (gamma interferon-activated inhibitor of translation) complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes. Upon interferon-gamma activation and subsequent phosphorylation dissociates from the ribosome and assembles into the GAIT complex which binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs (such as ceruplasmin) and suppres [...] (203 aa)
Rpl2760S ribosomal protein L27; Component of the large ribosomal subunit (By similarity). Required for proper rRNA processing and maturation of 28S and 5.8S rRNAs (By similarity). (136 aa)
FauUbiquitin-like protein FUBI. (133 aa)
Rpl1860S ribosomal protein L18; Component of the large ribosomal subunit. (189 aa)
Rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (124 aa)
LOC687780Ubiquitin-like protein fubi and ribosomal protein S30-like. (133 aa)
Rps1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
Rpl560S ribosomal protein L5; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...] (297 aa)
Rps1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
LOC10036078160S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (97 aa)
Rpl17-260S ribosomal protein L17; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL22 family. (177 aa)
ENSRNOP0000004070340S ribosomal protein S29. (56 aa)
LOC687780-2FAU, ubiquitin like and ribosomal protein S30 fusion. (133 aa)
Rps21-240S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
ENSRNOP0000004327040S ribosomal protein S29. (56 aa)
Rps10l140S ribosomal protein S10; Component of the 40S ribosomal subunit. (165 aa)
Rps4x40S ribosomal protein S4, X isoform; Belongs to the eukaryotic ribosomal protein eS4 family. (290 aa)
LOC108350501Ribosomal protein S29. (56 aa)
LOC10036011760S ribosomal protein L8; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL2 family. (257 aa)
Rps18l140S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA; Belongs to the universal ribosomal protein uS13 family. (152 aa)
LOC10036175640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
Rps27a-2Ribosomal protein S27a. (156 aa)
LOC10036346940S ribosomal protein S24; Required for processing of pre-rRNA and maturation of 40S ribosomal subunits; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
Rpl3060S ribosomal protein L30; Belongs to the eukaryotic ribosomal protein eL30 family. (115 aa)
Rpl2860S ribosomal protein L28; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL28 family. (137 aa)
Rps1440S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
Rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (131 aa)
Rps2840S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family. (69 aa)
Rpl360S ribosomal protein L3; The L3 protein is a component of the large subunit of cytoplasmic ribosomes. (403 aa)
Rps1140S ribosomal protein S11. (158 aa)
RGD156163540S ribosomal protein S17; Belongs to the eukaryotic ribosomal protein eS17 family. (135 aa)
LOC10035995140S ribosomal protein S20. (119 aa)
LOC100362684Ribosomal protein S20-like. (119 aa)
Rps4x-2Ribosomal protein S4, X-linked. (263 aa)
LOC100359951-2Ribosomal protein S20-like. (119 aa)
Rpl1060S ribosomal protein L10; Component of the large ribosomal subunit. Plays a role in the formation of actively translating ribosomes. May play a role in the embryonic brain development. (214 aa)
Rpl1160S ribosomal protein L11; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...] (188 aa)
Rpl1460S ribosomal protein L14; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL14 family. (219 aa)
Rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
Rps940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
Rps18Ribosomal protein S18. (152 aa)
Rps15a40S ribosomal protein S15a; Structural component of the ribosome. Required for proper erythropoiesis; Belongs to the universal ribosomal protein uS8 family. (130 aa)
Rps740S ribosomal protein S7; Required for rRNA maturation. (194 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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